CATENA Documentation

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Welcome to CATENA: an end-to-end, developer-friendly pipeline for large-scale connectomics. If you are curious why do we call it CATENA, read here.

CATENA brings together neuron segmentation (LSDs), synapse detection (Synful), microtubule tracking, neurotransmitter classification, mitochondria segmentation, EM masking, and visualization tools.

Use the sidebar to browse each module. If you're new, start with Getting Started.